I have an 88 t2 motor I'm swaping into my 87 na an I notice there is a tone of had vac lines can I remove this if I'm removing the emissions?

 

That's an extremely general question. I would suggest studying emissions removal threads in detail before removing anything. Yes, most of the vacuum rack is emissions related, but you also have others things like the FPR route through it.

 

You can definitely cap a bunch of them; but as previously said, you will probably need some of them.
I suggest the following link:
Rotary Resurrection home of the budget rebuild.